Set theory is simply a listing of all possible 2, 3, 4, 5, 6, 7, 8, 9, 10, and 11 note sets.
From WIK: Musical set theory provides concepts for categorizing musical objects and describing their relationships. Many of the notions were first elaborated by Howard Hanson (1960) in connection with tonal music, and then mostly developed in connection with atonal music by theorists such as Allen Forte (1973), drawing on the work in twelve-tone theory of Milton Babbitt. The concepts of set theory are very general and can be applied to tonal and atonal styles in any equally tempered tuning system, and to some extent more generally than that. One branch of musical set theory deals with collections (sets and permutations) of pitches and pitch classes (pitch-class set theory), which may be ordered or unordered, and which can be related by musical operations such as transposition, inversion, and complementation. The methods of musical set theory are sometimes applied to the analysis of rhythm as well.
Two-element sets are called dyads, three-element sets trichords (occasionally "triads", though this is easily confused with the traditional meaning of the word triad). Sets of higher cardinalities are called tetrachords (or tetrads), pentachords (or pentads), hexachords (or hexads), heptachords (heptads or, sometimes, mixing Latin and Greek roots, "septachords"—e.g., Rahn 1980, 140), octachords (octads), nonachords (nonads), decachords (decads), undecachords, and, finally, the dodecachord.
This is the raw material many modern composers draw on; Hanson used it tonally, Roger Sessions and Elliott Carter are two examples of composers who apllied their own individual methods to it. They're not serial, although the music can sound like that, because it is highly chromatic, concerned with the complete 12-note set, and uses smaller sets as 'motivic' material, or use the sets as abstractions to determine other aspects of form.
These are the books being referred to:
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It's also interesting to note that both books use the term "atonal" in their titles; both men are respected authors, Allen Forte being the head of the theory department at Yale for many years. "Atonal" methods like this are "non-tonal" methods, which do not use the hierarchy of tonality as the basis of their structural principles.
Atonal music is simply music which has no tonal center.